Publication List

Research Papers (Peer Reviewed)

  1. Ogata, H., Goto, S., Sato, K., Fujibuchi, W., Bono, H., and Kanehisa, M.;
    KEGG: Kyoto Encyclopedia of Genes and Genomes.
    Nucleic Acids Res. 27:29-34 (1999). [9847135]
  2. Goto, S., Nishioka, T., and Kanehisa, M.;
    LIGAND database for enzymes, compounds, and reactions.
    Nucleic Acids Res. 27:377-379 (1999). [9847234]
  3. Goto, S., Nishioka, T., and Kanehisa, M.;
    LIGAND: chemical database for enzyme reactions.
    Bioinformatics 14:591-599 (1998). [9730924]
  4. Bono, H., Ogata, H., Goto, S., and Kanehisa, M.;
    Reconstruction of amino acid biosynthesis pathways from the complete genome sequence.
    Genome Res. 8:203-210 (1998). [9521924]
  5. Ogata, H., Goto, S., Fujibuchi, W., and Kanehisa, M.;
    Computation with the KEGG pathway database.
    BioSystems 47:119-128 (1998). [9715755]
  6. Bono, H., Goto, S., Fujibuchi, W., Ogata, H., and Kanehisa, M.;
    Systematic prediction of orthologous units of genes in the complete genomes.
    Genome Informatics 1998, pp. 32-40 (1998). [pdf]
  7. Fujibuchi, W., Sato, K., Ogata, H., Goto, S., and Kanehisa, M.;
    KEGG and DBGET/LinkDB: Integration of biological relationships in divergenet molecular biology data.
    In "Knowledge Sharing Across Biological and Medical Knowledge Based Systems", Technical Report WS-98-04, pp. 35-40, AAAI Press (1998).
  8. Fujibuchi, W., Goto, S., Migimatsu, H., Uchiyama, I., Ogiwara, A., Akiyama, Y., and Kanehisa, M.;
    DBGET/LinkDB: an Integrated Database Retrieval System.
    Pacific Symp. Biocomputing 3:683-694 (1997). [9697222] [pdf] [ps]
  9. Goto, S., Bono, H., Ogata, H., Fujibuchi, W., Nishioka, T., Sato, K., and Kanehisa, M.;
    Organizing and computing metabolic pathway data in terms of binary relations.
    Pacific Symp. Biocomputing 2:75-186 (1996). [9390290] [pdf] [ps]
  10. Ogata, H., Bono, H., Fujibuchi, W., Goto, S., and Kanehisa, M.;
    Analysis of binary relations and hierarchies of enzymes in the metabolic pathways.
    Genome Informatics 1996, pp. 128-136 (1996). [GIW96014] [pdf] [ps]
  11. Sakamoto, N., Goto, S., and Takagi, T.;
    A Deductive Database System for Analyzing Human Nucleotide Sequence Data.
    Int. J. Biomed. Comput. 36:171-179 (1994). [7960201]
  12. Goto, S., Sakamoto, N., Takagi, T., and Ushijima, K.;
    A Deductive Language in Object-Oriented Database for Genome Analysis.
    Proc. Int. Symp. Next Generation Database Systems and Their Applications, pp. 123-129 (1993).
  13. Goto, S., Sakamoto, N., and Takagi, T.;
    Object-Oriented Database with Rule-Based Query Interface for Genomic Computation.
    Proc. 3rd Int. Symp. Database Systems for Advanced Applications, pp. 65-72 (1993).
  14. Takagi, T., Suzuki, T., Goto, S., and Ushijima, K.;
    Applicability of a Deductive Database to CAD Systems.
    Proc. Suppl. 7th Int. Conf. Data Engineering, pp. 51-58 (1991).
  15. Takagi, T., Suzuki, T., Goto, S., and Ushijima, K.;
    An Evaluation of a Deductive Database System in CAD Application.
    Transaction of the Institute of Electronics, Information and Communication Engineering of Japan J74-D-I(8):485-495 (1991). (in Japanese).

Review Articles and Book Chapters

  1. Goto, S.;
    Simulation of Metabolic Network.
    bit, 31(6):18-23, Kyoritshu Shuppan (1999). (in Japanese).
  2. Goto, S.;
    Current status of integrated biological databases.
    Kagaku to Seibutsu, 36(5):319-324 (1998). (in Japanese).
  3. Goto, S.;
    KEGG: Kyoto Encyclopedia of Genes and Genomes.
    The Usage of GenomeNet Databases [2nd Edition] (Takagi, T. and Kanehisa, M. eds.), pp.45-60, Kyoritsu Shuppan (1998). (in Japanese).
  4. Goto, S.;
    Deductive Database for Metabolism.
    Human Genome Project (Kanehisa, M. ed.), pp.146-159, Kyoritsu Shuppan (1997). (in Japanese).
  5. Kanehisa, M. and Goto, S.;
    A systematic analysis of gene functions by the metabolic pathway database.
    In "Theoretical and Computational Methods in Genome Research" (Suhai, S., ed.), pp. 41-55, Plenum Press (1997). [ISBN:0-306-45503-X]
  6. Goto, S.;
    Usage of DBGET.
    The Usage of GenomeNet Databases (Takagi, T. and Kanehisa, M. eds.), pp.11-32, Kyoritsu Shuppan (1996). (in Japanese).
  7. Goto, S.;
    Integrated Database Environment by WWW.
    The Usage of GenomeNet Databases (Takagi, T. and Kanehisa, M. eds.), pp.79-100, Kyoritsu Shuppan (1996). (in Japanese).
  8. Goto, S., and Kanehisa, M.;
    Genome Database and Genome Information Analysis.
    BIO INDUSTRY, 12(8):56-64 (1995). (in Japanese).

Symposium and Workshop Presentations

  1. Akiyama, Y., Goto, S., Uchiyama, I., and Kanehisa, M.;
    WebDBGET: an integrated database retrieval system which provides hyper-links among related entries.
    MIMBD'95: Second Meeting on the Interconnection of Molecular Biology Databases (1995). [pdf] [ps]
  2. Goto, S., Akiyama, Y., and Kanehisa, M.;
    LinkDB: a database of cross links between molecular biology databases.
    MIMBD'95: Second Meeting on the Interconnection of Molecular Biology Databases (1995). [pdf] [ps]
Last updated: June 18, 1999